GgaEX1020146 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4905912-4908313:-
Coord C1 exon
chr15:4908088-4908313
Coord A exon
chr15:4907659-4907766
Coord C2 exon
chr15:4905912-4906048
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTTTCCAGAGA
3' ss Score
9.13
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
ATGAGCCTGGGCGACGTGCGGGTGCTGTGGTTGAGGGATCGAGTGCTCGCTGCCCTGGGGTTGACCGACCCGGCGCCTTTCGAGGAGCTGCTCAACCGCAACGGCGGCGAGGCTGGGCGGGCCGTGCTGCGCTTCTTCAACCGCGGTGCTGAGAACGATGACGATGTCACGGCCGTGCTGCTGCTGCGGGCCGAGCGGCGCCCCCAAGAGGGCGGGGAGGCAGCGG
Seq A exon
AGACAGGTGGTACAGATGAGGTGGGAGATGAACAGGAGGAAGAAGGCTTTGATAACTCATGTCCTGAGCAGCTGGATGACGCCACCTCATCTGTGGCATTGGAAGGAA
Seq C2 exon
ATGTGATTCAGAAAAGCAAAACATCCGATCTGGAATCTTCAGACAAAAGAAGTGTTTCAGGTCATGTGTCAGCTCTCTCTAGTGGGTCTGCATTGGGTGAAGTAGAGCAAAGACTTGCAACGGAACACACTACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGAGGAGCTGCTCAACC
R:
TGCAGACCCACTAGAGAGAGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]