GgaINT1011471 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4905912-4907766:-
Coord C1 exon
chr15:4907659-4907766
Coord A exon
chr15:4906049-4907658
Coord C2 exon
chr15:4905912-4906048
Length
1610 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
TTTGTGGTATTTTTTCTTAGATG
3' ss Score
7.7
Exon sequences
Seq C1 exon
AGACAGGTGGTACAGATGAGGTGGGAGATGAACAGGAGGAAGAAGGCTTTGATAACTCATGTCCTGAGCAGCTGGATGACGCCACCTCATCTGTGGCATTGGAAGGAA
Seq A exon
GTAGGTGATATTAGGAGGAAGTTTTTCACCCAGAGGGTGGTGACTCACTGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGCTCTGGTGGTTGGTGACCCTGCACATAGCAGGGGGGTTGAAACTGGATGATATTTCAACCCAGGCCATTCTATGATTTGAGCAGCCAGAGCATGCAGGTTTCAGGCCTTTTTGCTGTGGGGGTTTGGTGTGACTCCTCAACACAGCCCTCAGAGCAGATCCAGCAGCACTTGTAACATCAGCAGCTTCTAATGCCTGCAAAGCAGATCGGATTTTGTGGTTGGGGTCATGGGCAGAGGGGTGAATTAATGGTTTCTGATGAGCTGTGTTCTTTTGGAAGAAGCCTCTTGTGGTATGGCTCTTTCACGTTTTGATGGAATGAAAGAGGCTGACTAGGATAAAAAAAACAAACTCATGCAACAAAAACACAGACAGCAAACACAGATCTTTCTCACAGAAATGGAAGAATAAAGAAAAGAATGGTAGAAAGGTCGTCAGAAGAGAATAATGATTTTCTATGGCTCAGAGATGCAATTTTCTTCTCTATTGTCATAGTATGTTTATAACTTTTGGAAGCTTCTGAAACAGTAACTTGTAGAAGCAAAGAGTTGTCATCTGGTATTTTATACCATTTTATACCATCTTTTATTGAGGCAATAGGATAAGGCAACGGGGAAACTCAAGAGGAATACTCCAGGGGAATTAGGAAATTATACTTGAAGAAGATGACAAAGCAGGCTCTCTTTGCACACACCTTGGGAAACAAACAGGAGGAGCTGGAAGCCACCATGCTACTAGAGAACCACCATGTAGTTGCAATCAGAAACCTGGTGGGTTAATTCCCATGACTGGAGTGTGGCTGTTGATAGCTATGAGCTGTGCAGAAGAGACAGGTAAGGAAGGGTGGTAGGAGATGTTTCTCCCAAGGAAGGAACAGAGTGTGAAGAGCTTTCCCTGAAGAATGGCCATGAGCAAGTTGAAAGCACATGGGTGAGAGTTAAAGACTGAGGCAGCAAAGGGAATCTTGTAGTTGGTGTCTACTGTAGGCTGCCTGATCAAGTGGAGCTTGTTAATGAAGCCTTCTTCCTTCAGCCATAGGAGGCATTGTGATTGCAGGCTGTTGTCCTGCTGGGGGACTTCAACCACCCTGACGTCTGCTGAAAAAGTAGCACAGCGAGCTGTAGGTGATCCAGGAGACTTCTTTAGCCAAGTAATAGTCCCACTAGGGAAAATGCAGTACTGGACAACTAATTGATGACATCAGGATTGAAGGCTGCCTGGGCTGTAGTCTAGAATGTTCTAAATGAAGCCCAATTATATGTAGGATGTAATATGGTTTCTTCCATTACTGGAATTCAGTCCTAATGCAGGCAATAGTGCTATCCTATAGGGAAATGTGTAGATGGTTGGTTGTTGAAATGTGGTGAAGAGGGAAGAAAATGCTCAGTTAAGTAGATTTAGAAGAAAATCGGAAGGATCTATCTCATGTGCTTAGAATACATGTACTTTAAGAGATTTCCTTTGTGGTATTTTTTCTTAG
Seq C2 exon
ATGTGATTCAGAAAAGCAAAACATCCGATCTGGAATCTTCAGACAAAAGAAGTGTTTCAGGTCATGTGTCAGCTCTCTCTAGTGGGTCTGCATTGGGTGAAGTAGAGCAAAGACTTGCAACGGAACACACTACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTACAGATGAGGTGGG
R:
CGTAGTGTGTTCCGTTGCAAG
Band lengths:
238-1848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]