GgaALTA1012613-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13053325-13066204:+
Coord C1 exon
chr8:13053325-13053429
Coord A exon
NA
Coord C2 exon
chr8:13066195-13066204
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGCCTGGCTCGATGAGGCAGTCA
3' ss Score
-3.39
Exon sequences
Seq C1 exon
CCAAAACAGAAAGAAGAAGGGAAGATTCAAGGGCAGCTTAATAAATCTGATTCTAACCAGTATATCAGAGAACTGAAAGATCAGATAGCTGAGCTGCATCATGAG
Seq A exon
NA
Seq C2 exon
TCAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-45-55,45-54-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009552fB7286
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]