RnoALTA0014310-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:3011574-3027503:+
Coord C1 exon
chr14:3011574-3011669
Coord A exon
NA
Coord C2 exon
chr14:3027494-3027503
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGCATAACATGATGAAGTAGTCT
3' ss Score
-2.7
Exon sequences
Seq C1 exon
AAAGAAGAGGGTAAGCTCCAAGGACAACTTAACAGGTCTGACTCTAAGCAGTACATTCGGGAGCTGAAGGACCAGATAGCAGAGCTGACTCACGAG
Seq A exon
NA
Seq C2 exon
TCTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-51-51,51-50-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5044
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]