RnoEX0033412 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:3011574-3038237:+
Coord C1 exon
chr14:3011574-3011669
Coord A exon
chr14:3027494-3027503
Coord C2 exon
chr14:3034569-3038237
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGCATAACATGATGAAGTAGTCT
3' ss Score
-2.7
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAGAAGAGGGTAAGCTCCAAGGACAACTTAACAGGTCTGACTCTAAGCAGTACATTCGGGAGCTGAAGGACCAGATAGCAGAGCTGACTCACGAG
Seq A exon
TCTACATCAG
Seq C2 exon
CTCAGATGCCTAAAAGGCCAGCGGGACTTCTCCAGCCGACCTCCTTTTGATGGGATCCACATTGTCAGCCATCTAATAGGAGACGATGAGTCATTCCACTCGTCTGATGAAGATTTTATAGATAGTTCCTTACAGGAAAGTGCCATTGGTTTTCCTTTGCACAGAAAATCTGGCCCCGTGTCTCTGAATCCTGCTTTGGCAGATGGCAGTGAGAGCGAAGCAGAAGATGGTGTGCTGGGAACTCAGGAGAGTGACCCGGAGGCTCCAGAGAAGCAGATCCCACAGAGGGAGTCCTACTCAACTACCGTGTGACCGACCGACCGTCACTGTGACAGCTGGAGTCCTGAGGGCAGCAGTGTTACACGAGAAGAGCCGGAGCCATCCCTTGTCCTGTACACATCAGTCTGTTTTACAGTCTTCTCTGACTGTCTTTGCCAAATGCTCACTGAATTTCCATTGCCACAGTAGACTGAAGTATGTAATTGGTAAATGGGGCTCTAACAGTATTACCGAGTATAAATGTTTCCTATTTAGAAAATACTGCTATGTCTAAATGTGAGGACTGTTTAAACATTGAGGACTGTGGGAAATTGGGTTCTTTTTAAACAAAACTGCTCTTGTGCAGTGTTTTATGCTCCTTGAACAAACTGTACATTTGTGTTCATTAATGTGCTTCCAAGTCAGCTGCCTTTACCCATCTGACCAGAACTTAGATGTGATTCAACCTGTGTTTGAGGATGTCTCTCTCTTCACTAAAATTCAGTTGTTTGTGGCAATTAGAGACTGTCACACGACACTTTTTCTCTGTATAATTTCTAAACACAAAGTAATTGTTCTGAAAGTTTTTTGTTTTAGTTTCTAAGTTTTATGTGTATTATACTTCTCTCTGTTAGTCAGAATAGTAGCAGGTTGACTACAGATATAGTATTTGTACATATTTATAAATCTGTATCACCCAGCATCCTCTTACAGGAGTAGCAAACATTGACAAGGACTTCCTTCAGCGTTCTAACAAGACTTCTGTAAATAACAGGTGAAAAGAAAACTAAATACAAATCAGACACTACCGGCTTAGCAGCTCTAGTAACTTGCTAGCAGATTCATAACTGATTGCCGCTCAAACACTACTGGTGAAGTTCTTTCCTCCATCTTTAACTAATAAACTTGTCATGGTTAAAGAGGCTATAGCACATACTATTTCATGCTAATCTATTTAATATAATTTAGCACTAGAATAAGGTCCAAGATGCACAGCAAATATATCTGAAAAAAAAATGTTGTGAGTCTTCTATTTAAATTCTTTAGTTTCTAACGGACAGGTAAAGCCATAAAAACCCTTTACTCTTAGTCGTTTCCTTGTGTTCAGACTTTTTCTCTAGAAAGCCGAATGCCTGTTAGTTGTGAGTTGAGAAAGGACACTTAACCTGTGGGAAGGCTGCAGGCCACTGTTGACTGGATGTCTCCACACTCTTGTTGGCAGCCTAGGAAAGGAAGAGCCATAGTGGGAAATAGAATTTAGTACATTTACGGAGGTGCATTCGCACACAGAATGTTGTATATGTAGAGAAAAATGTTTTACAGAATGGAGTAGAAGAAACAAAAAAGTTGTCATTCTAAAACTGTGATGCCTTACGCTGCATTGGGCTAGGCTTTCCCAGCAAGACTGCCCCAGCTCCTCTCTTACTTGGCAGACAAGATTGGAACCGTGCCGTCTGTGTCCAGAGCACCCACTAAATTCTAGTATTTAATTTACCTGTGATCACAAGCTAGTTATTTAAGGTATTAATTCAAATCTCTTTCCAGGCTTTTCTAAAGGCCTAGCTAATGAGTTTTTCAGTTCCCTGCTCTCTGGCAATAAAGTAGGTTTATTTAAATCTGTTTCCTGAGAGTCTTCTGTAGAGGTGGGCGTTCATGAGCATCATAGTCAGGGCTCTGGTAAGAGTGGATCCTGCTCCCAGTGTTGACAACACTGCTGGGGTCTAGTCCTTTAGGGTTCTCCAGACAGTCCTGAACTGTTAGTCCAGGGAGTTGTCGATAGCCCAGTGAAGTGAAACGACTTGTAGCCCTGTTGTTATCAAGATCCACATCAGGAAACCTGAATGGGGCCAGCAGAACAGCTCATAAGTTAGGATGCTTACCTCTGAATGCCCACGACCCTGTCTCCAGTTCCAGCACCACCAAAAACAAACAAGCTCAGAGAACTTCCTGAGCTCTTTGTGGTTTGAAGTAGGTGTGAAATAACCATGGTAATTCAACTTGAATTCATTGACGCTGTTGTGCTCGAAGCAGCATCTATTCAAGGTTCTTTGAGTCAAGTCAGGTGTAGGGACTATGCCTTCATCTCCTCCTTTTCTGGAAGCTGAGGCAGGAGGATTGCTTGAGTACAAGACCAGCCTGTGTAACAGTAAGATTTTGCCTCAAAAAAAAAAAAATTTGAATTTACATACACCTGAGAGATGTGAAGTCCTTCTGGCCGTTAGGGTCCTGCAGGACACTTTGCTCCGATCTGACTCGGTCTCATTCAAACTAATGTTTAGGTCTGTTTAGGACTGCAAGGGGTTGGACTGTGCTCTAATGACGAGCTTTACTTCATCTGATATCTTTGTGTCTTTCTAATGGTATCTGTTCTAAAACTTGAAGAATGATCTAAGGAGTAAATGGGCGGACGACGGACCATAGAAAACCCTGCTCTCTTGGGATAGTGACTTTCCGCCCCAGGTGACACTAAAGGAGAGGCTGCAAGCCCAGACCTTAGGATCCAGAAAGCACTTTAACAAACCTTCTTTTCAGTACTGGGGATGGAACCCAGGGCCTTACACAGTGGGCAAGCTCTCTACCACTGTGCCACACCCAGATCTGACTTCTTCAAAATCAATGCATACATTTTCTTTATGGAGAACGAGGCCAAAGAGATTGTTTTTTTCAACTTCGACTCTGGTTTCTTGTTGTTTGAATTTTTTGTTTTGGTTTGTTTTTATTTCGTTTGGCCAGTTGGCGGCCAGTCAGTCTTTGCTGGTTGATGGAAACATCATATTCCAGCTAACTGTCTGTCTGTGTTGAAAACAAGAGAAGAAGCCTTTTCTAGCCCTGAGCACAGTGCAGCTTGTGAATTTCCAGGCAGTGCCTTTGATTGGAAATGATGTCACTGCTTTTGAAGCACATTGTCCCTGGCTTCGTAAGAAGTCACTTGGTTCTGTGTTCACCATGCATAATGCTCTGTAATTTCAATTTTAGAGGCTAAGGATGTCAATTATGTTTCGGTAAGCTCTTCATGGTCAGCATGGTCACTGCACAACACCAAGACATTGCTGGCTAGCGTATGCAGAGTCAGTAACTCACTAAAGCAGTGAGTTTCAGCGTGAAAGTTACTGCTACTCTAGATGAGCAAGCAATTTTTAATTAATTTCTTATTAATTCTGAAATTAATTAAAATTTCTTATTGACAGTAGAGTAGGCAGATGCTATTTAAAATCCAACTTTTTACATTACACCCATGGACCTACATACCTCTTCCTTCCAGAGAAGAGGTGGCACGGTAATACATTGGACATGCAAAGTTATAAATGTATTTCATTGTACTGTTGGGTTTTCTTAATTGTAACACTGTATAACCTAAAATGTTTACTTGTGCCTTTGCTTTAAATAATTAAAGTTTCTCATTTTGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=1.000 C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5044
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCTGAAGGACCAGATA
R:
CCATCAAAAGGAGGTCGGCTG
Band lengths:
92-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]