GgaEX1023233 @ galGal4
Exon Skipping
Gene
ENSGALG00000005935 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr8:13053325-13075643:+
Coord C1 exon
chr8:13053325-13053429
Coord A exon
chr8:13066195-13066204
Coord C2 exon
chr8:13071109-13075643
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGCCTGGCTCGATGAGGCAGTCA
3' ss Score
-3.39
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAAAACAGAAAGAAGAAGGGAAGATTCAAGGGCAGCTTAATAAATCTGATTCTAACCAGTATATCAGAGAACTGAAAGATCAGATAGCTGAGCTGCATCATGAG
Seq A exon
TCAGCATCAG
Seq C2 exon
ATCAAATGCTTAAAAGGACAGAAAGACTTCTCAGACCAACCCACTTTTGATGGGATTCACATTGTCAACCATTTCACAGGAGATGATGAATCATTTCATTCTTCTGATGAAGATTTTATAACTAACTCCATACAGGAGAGTGGGGTAAACTTTCATTTACACAGGAGGACTGGACAGATGGTTTTGGATCGCACAGTTGTAGACAGCAGTGACAGTGAGAATGAAGAAAGCACACTCCAGACTGGAAACTTGGACAAGATGGTTTCCAAACAGAGGAGAATGGAATCTTACTCTACTACTGTGTGATGATCACTGTGATTAGCATTTGAAGACTCTTGTGTTTCTTTAAGGATTCAATTGTCAGATAATTGAAGGCATCCAGCAGTTGGTTTAGTAACTATTGGATCTGTTCTGGCCTGTGATAAATATACACGCGTACTGTCCATCTGCCTTCTCTTTGCCAAATCTTGCTAGTGACATACCATTGCTGTGAAGCAGGCTGGGAAGAAGTTAATGGATGACGGTTCTGACAGTATTACTGAATGTTCCTTGTTTTAGAAACTGCAAATGTATAATTTCTTTAAATGTGTAAGAAACCTTTTTGCTGTTCACAAGGATGGGAATTATTTTCCTCAAGAAATCGCTCTTGTGCAATATTTTATGCTCTGAACAAATGTGTATGTTTTACATCATTCTTCATTTGTGATCAAGATGGACTCTAACCATCTGATCATATGGCATATATATAATTATGCTTCTCAATTACTTCTGTTTTATTAAAGTTACCAAATGCTCACAGAAGGGTTGAAAGAGGAGCCATCATCTGTACTACTTCCTATATACAAGTACTGGTCACTAATGTCATAAAGGTGGTGTTTTTCACCCTTTTCACTTAGATTTATGTGCATCTGCTTTTGATGTTGCTAAATAATACCTGGTCTGAATATATTAACTACAATAATGTTTATTTTGTACATATTTATATAAGTGCACCAAGCTGAAAATGTATATTATACCATTTTATACGAGGAATGTAAATGTTGCGATATGACTGTCTCTCATATTCTACCTGGAAAATGAATTCTGTATATGCACACTAGAAATGCTAAATAAAAGTAAAACACTAACTTTACATTTAGTTTCAGTCTAGCTACGCTAACAGATTCCTGTCTAACTGAAATGCTTGCTCAAAACACTATTGACTGAAATCTTTTACCTTCATATATATGTAATGAAAATAAATTTTTCACAATTTAACAAGGTTGCAGCATTTACTCTCTAGTCATTTCTAAGCTACAGCCCTCAGTTACCCTCTGGCTCTGAATCAGAGTGGTAGTTTGAATAAAATGAAAAATTATTTGTGTATTCCAGTTAACAATTCTAATGAAGGTATCAGTGCAGTGAATGTATCTAAGTTTAGTTTTCTTGCAGTTTTATATTGCTGTTATCTGAGAAATAGCTATTCTGGTGACAGGATCTATACTATTCTAAGCCAAAGTGGTGAGTGCTGAGCAATTCTGCTTTTACCCTCTCCTGTAAACTGAGATCCAATAGCACAGCCCCCTGCATTGGTTCTTGAACAGAACAACTTCATCTAATATTGTCATATGAGCCCCCTTTGAGACAAGCTAGTTAGCAATTTTCACTACTACTAAGAATATTCTTATCTTACATAAATGAACAGTTCTTGGGATTTGTTTTCAAGTAGTATTTGCAACTGTATTTTATTCAAGAAAAAGAAGGGCTATGTTGGTAGTAATAGCATGTGTGCTAAGTCTTACTGTGAGAAGAGTGTAGCTATTAAAAATCATGGAGCTGTGGAAGCACAGTGCTGAATATGTTTGAAGAAGGTCTTTTGAATGAGTCCCTAGAAAAACAGCAGCAGTGGGGAGGAAGAATGTTTCAAAGAACAAATAGGAAAGGCTGAATGGAAGAAACATCTTCTGGGTTTCTCAACTGCTTTATTTGTCTACGTTTTGTCTAATTTGAATCTCAAAGCAAGGGGGTGAAAAATCGTAAGTTACCCACTTCTGTATATTCTGACTTGCCTCAGTATTTCTTCAAACTGTTCCCACATCCTGCCTACACCATTTGCTGTATAGCCCGTGGAAGTTGTCATCTCTGAGGAGGATTAGCTTAACTTTGGTTCTAATCGTTGTTAGAAATCTCATGCAAAAGCAAGTCACGCCTTTTTTGTTTGCTAACAAGAAAACAGTTGTTTTTTTTCTTTCCAGTGAGGATCCAGTAACATATTTTGCAGCTGGATAATTGTTACCTAAGATGATGGGTGATAAAGGTCTTGTTGCCTGTTATCGATACTAGCTGCAAGCCTCTCTTAAATGTAATGTTCCACAATAAGCCACAGGAGTGAAATTCAGTTGGAGAGCCATATAAACACTGTCTGAGTGCTATAATTTTGCCTTAACTGCCTGACTGTTCAAGTGCTAGTAAATAAGGTCAGTTAACAGGAGTTGTTTCCTGAACTTCTGTATTTGTATGAATTGCTAATCGTATCATTGCAAATGCTGAATAACAGCACAAATACAAATATCAAGGGAAAAGTAAAGGGCTTTATCCAACTAGCTGCATCCGTTTTAGAGATGAAGGTGAATGGATGAAATGCTACAGTTTCAGAAGTTCTACGTGGAACATCCTCAGAAGACAACGCAAAGAATGCTGTTGAGAATAATCATACTTTTTCTTCAGACAGTCTGCTACAAATGAAGCTAATTTCTTTGCCTGTGTGTTACAATTTGAATATATACCTAGAATAGTGGCAATATATTAACAGTGTAGATGGTACATTTACTAGTAAGTCAATAAATAAGGCACATTAATTGTGCTACACATCATGGCCATGCTTACGTGACCTAAAAAACTTCATAGCTCTCTTAGGTTTGTTGCTTTGCTACATTCAGGCTGCAGAAACTCAGTGTGAGTGTTAAAAGGTTCAAAACGTGTAAACGTAAGAATTGGCCTCAATGTGTGCATATTCAAGAATCCTGAGAAGGTATTTAGGTAAAGTGCCATACACAGTTTCCATTTAAATTTTATGCTTGGCAGTAAAAAACGGTTCTGTTTCCCGGGTCACGTAATCAAATGCTTTCAATAGCTACAAAAGCTTGAACACTTAGATTTTGTTGTTCCTTCAGGCTAAAGATACAAATATTTTAGAATCTGATAGCATTTTTTTTATTAAATCTCTATTTCAGGTGCATTTGTTTCATGAAATCAAAAGATAGTAGAATTATAGAACAATTTGGGTTAGAACGGACTTCTAACACATCTAGTTCCAATCCTGTCAAGAGGCACCTTCTACGAGACCAGGTTTGATAAATGATAGTCACGGATCTCTTTTGTTTGCCATAACTCAGTAAAAAATTAGAAGTTTAAAATATTCCTGAAGAGCTGGAAACATGACCAGGTGTGGTAAGGAGCGTGTGTGAAGGCAAGAAGCATCTGTTAGTCAGACTGTTGGTTCATGGTAGTCATGGCATTTCCAGTTGGTCAAAGGAAGGGATTGTTCTGCTCTACTCTGGTATGGCCTCAACTTGAGTGCAGTGTGCAATTTTGGGTATCTTAATAAAGGATCCAAAACTATTGGTGTGCCCAAAGGAGGGCTGCAAAGATGGAGGAGGGCGTAGAAGGCAAGGCATGCGAGGACTGGCTGCAGTCGCTGGGTTTGTGCTGCCGAGAGCAGAGCAGGCTCAGGGGAGGCCTCATAGTGTGCAGCTCCTCACAGGGATCAGAGGGGCGGTGCTGAGCTCTGCTGGGAACACGTGGAGCTGTGTCAGAGGAAGGGCAGCTTTGGGTTAGGGACAGACTGCACCAAAGGGTGGTGGGTGTGAAACAGGCTGCCTAGGGCAGTGGGCACAGCACCAAGCTGCCCGAGTTCACTGTCTGGACAGTGCTCTCAAACATATGGTCTGCTTTTTGGGTGGTCCTGTGTGAAGCCAGGAGCTGGACTCGATGATTCTTGTGGGTGCCTTCCAACTCAGGATATCCCACAATTCTATGTTTTGACAAATATTTTATCTTCCACTAAATTAAAATTTCAGCTATGAGTGTAAATTCCTCTATTATTTTCACTAAAATAAATCCTTATAAGACAATAAAAGAAAAGCGACTGGCATAAATTTTACAGGACCACTTTGTAAATAATGTAATACTGTACTTAGTCACTATTCAGCTCTTTTGTAAAAAAGCGACAGAGAAGAAATTGCATGTTTTTGTTTTGATTTTATGTAATCACTGTTGTAAATAAAAGATGATGTTAGTGATTTTGAGAGAAATGTGATGCTCATTCCAAATTCATACTTTAACCCAAAGTGGTCTAAATATTTGTTAGCATAAAATGTCTACAGTTTAGTGTGGGTGTGCTGCTAATTCCTTTACCTGCAGAGGCGTCAAAGAAGTGTTGCACATTTTGAGAGAAGACAACGAATGGAGGACAATGCAGATTTCCTCGGACAGTCAATAGGCTGCTCCTGGAGGCTAAAAGTAACCACCACCAACCAACAAGCTTTAATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005935-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.750 C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009552fB7286
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATAGCTGAGCTGCATCA
R:
TGGTTGACAATGTGAATCCCA
Band lengths:
96-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]