BtaEX0013417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011363 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:HGNC:3501]
Coordinates
chr3:51040986-51074025:+
Coord C1 exon
chr3:51040986-51041081
Coord A exon
chr3:51061356-51061365
Coord C2 exon
chr3:51073714-51074025
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGCATAACATGATGAAGCAGTCC
3' ss Score
-1.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAGAAGAAGGAAAGCTTCAAGGACAGCTTAACAAGTCTGATTCTAACCAGTACATTAGGGAACTGAAAGATCAGATAGCAGAGCTGAATCATGAG
Seq A exon
TCCACATCAG
Seq C2 exon
CTCAGGTGCCTAAAAGGCCAGAGAGGCTTCTCCAGCCAACCCCCTTTTGATGGAATCCACATCGTCAACCATTTAATAGGAGATGATGAATCATTCCATTCCTCTGATGAAGAGTTTATAGATAATTCCTTACAGGAAAGTGGCATTGGTTTCCCCTTGCACAGAAAATCTGGTCCAATGTCTTTGGACCCCACTCTGGCAGATGGTAGTGAAAGCGAAGCAGAAGACAGTGTGCTGGAGACCAGAGACGGCAGTCGAGTGGCTCAAAAGGAGCAGCCCCTGAGAAGAGCCTCGTACTCAACCACCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011363-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=1.000 C2=0.658
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000040289fB2557
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTACATTAGGGAACTGAAAGA
R:
TTCCATCAAAAGGGGGTTGGC
Band lengths:
105-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development