DreEX0030978 @ danRer10
Exon Skipping
Gene
ENSDARG00000070839 | evi5b
Description
ecotropic viral integration site 5b [Source:ZFIN;Acc:ZDB-GENE-041111-244]
Coordinates
chr6:29021350-29032248:-
Coord C1 exon
chr6:29032153-29032248
Coord A exon
chr6:29024050-29024059
Coord C2 exon
chr6:29021350-29021706
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTTTCTGAGGTAGAAT
3' ss Score
3.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAGAGGAAGGGAAAGTCCAAGGTCAGCTCAACAACACCGACTCCAGCCAGTACATCCGAGACCTCAAGGATCAGATAGCAGATCTCAAGCACGAG
Seq A exon
AATGTTTCAG
Seq C2 exon
ATCCGATGTTTGCGAGGGCATCAGGGCTTACCAAACCAACACACTTTTGATGGGATTCATATAGTCAATCACTATGGTGGAGACAATGAATCCTACCAGTCCTCTGATGAAGATGGAGTGAAGCTGTCACCCCACCTGACCACTCATCAGGATAGAGGCCGGATCACACTACATCCAAACCTGGAGGACTCCGAAAGTGAGGGTGATGAGGAAGGAGATGCCCTACGACTTACCGTGCCCTCAAATGTCAGCCATAAGACAACAACAGTGTGAAACTGTGAAGGCCTGAACGGAGGGAGAGCTTGTCCATGAGCTCGTCCTTTCAATGTGAACATGGGACTTGAACTTGAAAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070839-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.500 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000124947fB2601
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCCAGTACATCCGAGA
R:
TGGTTTGGTAAGCCCTGATGC
Band lengths:
93-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]