HsaEX0023360 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:92974254-93029294:-
Coord C1 exon
chr1:93029199-93029294
Coord A exon
chr1:93001594-93001603
Coord C2 exon
chr1:92974254-92979527
Length
10 bp
Sequences
Splice sites
3' ss Seq
TGCATAACATGATGAAGCAGTCC
3' ss Score
-1.58
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAGAAGAAGGAAAGCTTCAAGGACAGCTTAACAAGTCTGATTCTAACCAGTATATTGGGGAACTGAAAGATCAGATAGCAGAGCTGAATCATGAG
Seq A exon
TCCACATCAG
Seq C2 exon
CTCAGGTGCCTAAAAGGCCAGAGGGGCTTCTCAGGCCAACCTCCTTTTGATGGAATCCACATTGTCAACCATTTAATAGGAGATGATGAATCATTCCATTCCTCCGATGAAGATTTTATAGATAATTCCTTACAGGAAACTGGTGTTGGTTTTCCTTTGCACGGAAAATCTGGTTCGATGTCTTTGGACCCCGCAGTGGCAGATGGTAGTGAGAGCGAAACAGAAGACAGTGTGCTGGAGACCAGAGAGAGCAACCAAGTGGTTCAAAAGGAGCGGCCCCCGAGAAGAAGAGAGTCGTATTCAACCACTGTCTGACCATCACTGTGACCTAGACTATGGATTTATTTAAGGGATCAGTTATCATATGATTAGGGCTTTTTGGAAATAATTTGTTTCatatgtacatatatatatatatatatatatatatatatatatatatatatatatatatatatatTTTACAGTCTTATCTGCCTTTTTATCTTTGCCAAATCTTTACCACTGATTTACCATTGCCATAAAGTAGACTGGTATATGGTTAATGTGTAAAACAAGGTTCTAACAGTATTACTGAATATTAATGTTTCTTGTTTAGAAAATGCAACTATATCTATATGTGGGAACCATTCTGAAGTTCAAAACTATGGAAAATTGAATTTTCTTCAGACAAAACTGCTCTTGTGCAATATTTTATGCTCAGTGAGCAAATTGTGTATTTATGTTTATCAATTTGTTCTCAAGGTGGCTGTCTACAGACATTTGACCAAGACATACATCTGATTTACCTTGTGtttttttttttattgttgtttttttttttaagacagagattcagtctgtcacccaggctggagtgctgtggtgtgatcttagctcactgcaacctccgcctcccaggttcaagcaattttcctgcctcagcctcccgagtacctgggactatatgtgcgcaccaccacgcctggctaattttttgtatttttagtagagatggggtttcaccatgttggctgggctggtctcgaactcctaacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccactgcacccagccTACCTTGTCTGTTTGTGTCTGGGAGGTTTTTTTTTTCTATTTTTATTTTTTCATGAAAATTATTGGTGGGCCACTGAAAGTCCCCACACACAAAGCCTTTATTCTATATAATTTTATAAACACAAATTCATGATTATCTGTTTTGAGAGTTTTAAGTTTTGTTTTAATGTTTAACTTTTATGTGCATATGATGCTTCCATGTGTTGGTTACTAGAGTAGTAGGTTAACTACAGACATACTGTTTTGTTTGTACATATTTATAAATCTGTACCACCTAACATTGAACATCATTTTATATGAAGAACATACATGTTGCAAAATGACTGCTTTCAGCATCTAACAGGACTTCTGTAAATAATAGGTTAAAAGTTAAAAATAAAACACTAATGTTTTAAGAGCTTTAGTATTTTGCTTAGCATTCAATACTAGCAGATTCATAACTGATGCCTGTTCAAAAACACTGTTGGTGGAATCTTTTATTTCATGTGTATGTAACTACTAAATTTTTCATGACTGAAGAGGTTATAGCACATATTAGTTAGTGCTAATATTCTACTGAATATAATTTAAGCAATGGGCTAAGGTCCAAGAAACATAGCAATTATATCTACAAATAATCTATTAACATGATCTTCAGAATCTCTAGTTTTTGTTCTATAGATAAAGCCATAAGAATCCTTTCCTACCAGTTTTTCCTATATCATTTAGATATTATTTCCTAGAAAACAGGATGCCTGTCACTGATAAGTTAGAGAAAACACCCAAATTATACTTGCACTATGGAAAGACGACATGAATATGTTGACTGGGTACTTTCTACTCTCATTTTTGTTAGCCTATGAAAAAAAAAACATTTTGTTAACCTATGGAAAAAGCCTTGGAAGAGAAAAGTAGAATTCAGTATGTATGGAGGCACAGTTTTGCACAGTATGTTGCATGCGGCAAAAAAAAAAATATGAAATAGAGTAGAAGAGATAAAAGTAGTTTTCTGTCAAAAACTAGGAGTTAAGCCTTCAGGTACGTTGTGGACTAGGCTTTCCAGCAAGGTTTTTGTAGCTATTTGCTTGCCTGAGAAATGAAATTGAAAACATACCCCTGCGTGTCTGTCCTTAACACCAGGCTAAATTCTGGTggttaaataacttatctgtggttacaagctagtaagtagcagagccaagaTTTtttttaatatagagacaggtgtctcactgtgttgtccaggctggtcttgaactcctggcctcaagtggtcctcctgcctcagcctcccaaagtgtggggattacaggtgcgagctactgctcccagcaagagccaagattttaacctagatctccctaacaccaaagcTTTTGAAAGGGTTCAGCTGAAGAATTTCTCAATTCTCTGttttgttttgtttttatttttgttttttgagatgaagtctcactgcactcaggctggagtgcagtggtacgatcttggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcagctcccaagtagctgggactacaggtgcacgccaccacaactggctaatttttgtatttttagtagagatggggtttcgctatgttggccaggctgatctcaaacttctgacctcaggtgatccacccactttgacctcccaaagtgctgggattactagacgtaagccaccacacctggcAATTCCCTGCTTTTTTGACAACATAATTTAAATGAATTTGATTTAAATGTTTCCTGAATATATATACAGATAGATAGATGAGTATCAACACTTACAAGCTCTACACAGTCTGTGAGTGTAGATACTACTTACTCGTAGGATTGTCTTGTGCTTTGGGGATTTTTGTTCGGAGTTCTATACTATCAGCCCAGAAAGCTATCAATGTCCAAGTGAAGTGAGATGATGCATGGCCACATTATTGCTTTGACCCTCACATCAAGAAATCTGAATGATCTGGACCAGGGGTCAGCAAAGTGCAGCCTACAAGCTATTGCAGTCAGCTGCCAgtttttacttttttaaatagttgggaaaaaaattccaaagactgatattttgtgtcacatgaaaattatatgaaattcaaattgcagtgtccataagtaaagttttattggggcacacccatgctcacccttttaaatattgtgtatggccgctttgtgctacagtagcagagttgagtcattgcaagggagaccatatggcccaggtagcctaaaatatttatctgatcctttacagaaaaagtttgctaacccttgATAACAGATACTCTAAAATGCAGGTTTTTCTTCTTCAATTTAGCTCAGTGGTAGGTCAAATTGTTTGCTTTTGCTATTAAGCTTATGATTTGGAAACGTAAAATTTCATGGTGGATATTATAATCAGAACTATTCAAAAGGGAAAACATGCCAGCCATTTTATATGATGAAGTCTCTTATTCCATAGAAAACTGTAGAAAGATATCTGTATCTTTGGAGAAGGAGAAAGAAAGGAAAGAACTCCAGAATCCCATCACTGTTCTTTAAAGCATGCATCACAGACCTTTAAGAGTATGCTTTATTGAGTAAAGGTTATAGTTTGACTTTAAGATAAGAAATTTTCTAGAATCATGTTTGAATTCTAAACGTTGATATTCTTAAGTACCATTTCTGATTAGGAATTAGGTGTTAAAAGAATCATGGTAAGGAAACCTTAATCCGTTGAAACTCTTGTAATTTGGACAACAAAAAACTAGAAATAACACTCTTTTCTTTGAAGATCTGATTCAAATACACCTTAGAAGAGTTTAAAATCTCCCAGGCCTTTAGGATGCAATAGGATATTATGCCTTGGTTTGACTCCTTTTCATTCAAATTAATGTAAGTATGTTGTTCAAGACTTTGAAGCATTGAACAATGTTCTCGATGAATTTTATTTAATTACTGACATTTTGTGATATTTGAATGTTATTAAGTTAAACACTTAGAGTTGAGTATATTCAGGGGAGAAAAGTGAATGAAATGACTCATAATAAGAAAGCTTGCTCCCTTGGGACAGTTACCTTCCTGGTGTCATTGCCATCCTGGGTTGACAAGCTGAGAGTAGAGGATACAAGTGATGTGAATAAAATGGAAATTGCATTGAGTTAATGAAACAGACACTTTTAGATCAAGAAAACACTTCAACAGCCTTTTTAGAAATtggcacactcctatagtcccacctactcaagaggctgaggcaggaggatcactagagtacaggagtttggggctgtagtgtgtaatgatcacacctgtgaaagaataaccactgcactccaacctgggcaacatggcaagaccctgtctctttaaaaaaaaaaaaaaTCCTGGGAAAAGAAGTCAAAGATGTAATTTTACACAATTTCTGCCCCCACCGTCTTTtttgtttgtttgtttgtttgtttgttttttgGCTAGATACTAGGTATTCAGTGTTTGCTGAGATGACAGGTTTCTACTAATCAGCCAGTTATTTGGGAAGGAGAAAAACTTTTTCTCAATTCTGAACATGATGCAGCTTGTTAACTCTCCAGATAGTGCCTTTGATTGAAAATAAGGTCTACACCTTTTTAAGTATATTATTTCTGACATCGTAAGAAATAATTTAGTTCCTTATTCTCATTTATCTTTTATATAATGTACTGTAATATTCAGGTTTAAAGTAAAATAAGTATATGAATTATATTTTGGTAAAACTGTTTCATGACCAGCTTGATTAATGTATATTAACATACCAGACATTGACAGCGAACATTTCATGAAATCAGTTATTTACTTACCAAAACAATGAGTTTTAGCTTGAAAGTTACTGCTGCTCTATTATTAACAAAACTAAGttttaaaaattaattttaattCTACTGAAGTTTAATTTCTGGTTAAAGGTATAGTGGATGCTATTTATGATCCAAGTTTTTACATCACATCCATTGATCTGCCTATCCCTTCTTTTTACTCCAAAGAGGAGATGATAGAATAATACATTCAGTATACTACCAAGAAGCAAAGTTATAATGTGTTTCATTTTGCTATTGGAATTTTTTATTGTAACATTGTATGATAACCTGAAATGTTTACTTGTGCCTTTTCTTTAAACAATTAAAGTTTTCCATTTTATAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.656 A=1.000 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTATATTGGGGAACTGAAAGA
R:
TCCATCAAAAGGAGGTTGGCC
Band lengths:
104-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)