HsaEX0023357 @ hg19
Exon Skipping
Gene
ENSG00000067208 | EVI5
Description
ecotropic viral integration site 5 [Source:HGNC Symbol;Acc:3501]
Coordinates
chr1:92974253-93029294:-
Coord C1 exon
chr1:93029199-93029294
Coord A exon
chr1:92980503-92980601
Coord C2 exon
chr1:92974253-92979527
Length
99 bp
Sequences
Splice sites
3' ss Seq
AAGCCTCACCTTCTCCCCAGGGG
3' ss Score
8.17
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAAGAAGAAGGAAAGCTTCAAGGACAGCTTAACAAGTCTGATTCTAACCAGTATATTGGGGAACTGAAAGATCAGATAGCAGAGCTGAATCATGAG
Seq A exon
GGGGAGTTGGGGAGAGAAGGCAGAAATGTTATACCGGACTGGCACTCCCCCCATGCAGAAGGAAACCTCATGAGTGGGAAGCAGCATTCCTCTCCCACA
Seq C2 exon
CTCAGGTGCCTAAAAGGCCAGAGGGGCTTCTCAGGCCAACCTCCTTTTGATGGAATCCACATTGTCAACCATTTAATAGGAGATGATGAATCATTCCATTCCTCCGATGAAGATTTTATAGATAATTCCTTACAGGAAACTGGTGTTGGTTTTCCTTTGCACGGAAAATCTGGTTCGATGTCTTTGGACCCCGCAGTGGCAGATGGTAGTGAGAGCGAAACAGAAGACAGTGTGCTGGAGACCAGAGAGAGCAACCAAGTGGTTCAAAAGGAGCGGCCCCCGAGAAGAAGAGAGTCGTATTCAACCACTGTCTGACCATCACTGTGACCTAGACTATGGATTTATTTAAGGGATCAGTTATCATATGATTAGGGCTTTTTGGAAATAATTTGTTTCATATGTACATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTACAGTCTTATCTGCCTTTTTATCTTTGCCAAATCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067208-'33-35,'33-34,34-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=0.970 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAGCAGAGCTGAATCATGAG
R:
GCAAAGGAAAACCAACACCAGT
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)