GgaALTA1015268-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013234 | HAPLN2
Description
hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410]
Coordinates
chr25:509580-510241:-
Coord C1 exon
chr25:509889-510241
Coord A exon
chr25:509691-509779
Coord C2 exon
chr25:509580-509690
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
GTATGATGTCCACTTTGCAGGGC
3' ss Score
6.73
Exon sequences
Seq C1 exon
AAAGAAAAGGAGAAAAAAAAAAGGAGAAGAAAACGGGAAGAGACGGGCACAGGGCAGGGAGTGAGAGCACAGCCAACACTGACCATGGGAGAAGGACGTGGGGCTGCTGGGGCACTGCCTGCCCCAGGATGGTGATGGTGACGGTGACAGCAGCGCTGGCTCACGGGGAGGGCAGGACCCAGCTGGGAGCACCCACAGCTGCCCCCGTGTCCTCGTGCCCCGTGTCTCCTCTTCCCAGCAGCAACACAGCACAGATTTGAGCTTTCCACATCCCTTCATCCTGAGATGGGGAGGCTGTGACAGAGCCAGGACGCAGGCGGTGGTGGATGGGCGCAGCAGCTCCCCCGGGGACG
Seq A exon
GGCAAACACTGAGATGATTGCTGCCCATGTCCCTGCTGCATCCCCCGGTCTGTCCTGCTGCGTGGCCCTGACCCCTTCGCTCCCCCCAG
Seq C2 exon
GCTTTCTCCAGTCCCCAGCCCTAAAGATGCACCGGGTTCTGTTCGCATCCCTCTGGCTCCTGGCAGCATCCCCCACCTCCAGCATCTTCCAGAAGCCAACAGGGAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013234-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.103
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0768612=V-set=PU(6.3=27.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAACACAGCACAGATT
R:
CAGAGGGATGCGAACAGAACC
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]