GgaEX1028046 @ galGal4
Exon Skipping
Gene
ENSGALG00000013234 | HAPLN2
Description
hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410]
Coordinates
chr25:509021-510241:-
Coord C1 exon
chr25:509889-510241
Coord A exon
chr25:509580-509779
Coord C2 exon
chr25:509021-509371
Length
200 bp
Sequences
Splice sites
3' ss Seq
GTATGATGTCCACTTTGCAGGGC
3' ss Score
6.73
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
AAAGAAAAGGAGAAAAAAAAAAGGAGAAGAAAACGGGAAGAGACGGGCACAGGGCAGGGAGTGAGAGCACAGCCAACACTGACCATGGGAGAAGGACGTGGGGCTGCTGGGGCACTGCCTGCCCCAGGATGGTGATGGTGACGGTGACAGCAGCGCTGGCTCACGGGGAGGGCAGGACCCAGCTGGGAGCACCCACAGCTGCCCCCGTGTCCTCGTGCCCCGTGTCTCCTCTTCCCAGCAGCAACACAGCACAGATTTGAGCTTTCCACATCCCTTCATCCTGAGATGGGGAGGCTGTGACAGAGCCAGGACGCAGGCGGTGGTGGATGGGCGCAGCAGCTCCCCCGGGGACG
Seq A exon
GGCAAACACTGAGATGATTGCTGCCCATGTCCCTGCTGCATCCCCCGGTCTGTCCTGCTGCGTGGCCCTGACCCCTTCGCTCCCCCCAGGCTTTCTCCAGTCCCCAGCCCTAAAGATGCACCGGGTTCTGTTCGCATCCCTCTGGCTCCTGGCAGCATCCCCCACCTCCAGCATCTTCCAGAAGCCAACAGGGAGCCCTG
Seq C2 exon
CCACCCCACGCCTGCAGTACCTGCTGGAGCCCCTGCACACCGCAGTGCACACGCAGCGAGGTGCCACAGCCACGCTGCCCTGCGTGCTGCGCGCCCTGCCCCGCAACTACCGGGTGAAGTGGAGCAAGGTGGAGCCAGCCAACTATGGGGAAAGCGTTATCATCATCACCAACGGGCTGTACCATAAGAACTATGGGCCGCTGAGCCCCCGCGTGCGCCTGCGGCACAGCCACCGCTACGACGCCTCGCTCACCATCACCAACGTGGCCTTGGAGGATGAGGGACGCTACCGCTGCCAGCTGGTCAACGGGCTGGAGGACGAGAGCGTCTCGCTCACGCTGCACCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013234_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0768612=V-set=PU(6.3=27.6)
C2:
PF0768612=V-set=FE(92.1=100),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAACACAGCACAGATT
R:
CAGCCCGTTGGTGATGATGAT
Band lengths:
296-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]