BtaEX6014356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015784 | HAPLN2
Description
Bos taurus hyaluronan and proteoglycan link protein 2 (HAPLN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075684]
Coordinates
chr3:14256163-14259093:-
Coord C1 exon
chr3:14259032-14259093
Coord A exon
chr3:14256716-14256821
Coord C2 exon
chr3:14256163-14256516
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCCAACCTTGTGCCCCACAGACT
3' ss Score
7.98
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CAGGACCAAAAGCTGCCAATCACTGCACCTGCCATCTCTGTGAAGAGGCCCACTTCTAACAG
Seq A exon
ACTGGGCTGACTCCCATCATGCAAGGCAGGATCAGCCTCCCCACTCTCTGCCACTTCCTTCTCCCTTGGGCCTTCACCACCTTCCACAGAGCCCTGGGGAGCCAAG
Seq C2 exon
CACCCCACCCTGGCCCCCACTACCTCCTGCCCCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGACCACGCTGCCCTGCGTCCTGGGCGCCCCGCCTCCCAGCTACAAGGTGCGCTGGAGTAAAGTGGAGCCCGGGGAACTCCGGGAAACGCCCATCCTCATCACCAACGGACTGCATGCCCGGGGCTACGGGCCCCTGGGGGGGCGCGCCAGGATGCGAAGAGGGCATCGGCTGGACGCCTCCCTGGTCATCGCGGGCGTGCGCCTGGAAGACGAGGGCCGGTACCGCTGTGAGCTCATCAACGGCATCGAGGACGAGAGCGTGGCGATGACCCTGCGCCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015784-'2-6,'2-5,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NA
A:
PF0768612=V-set=PU(0.8=3.3)
C2:
PF0768612=V-set=PD(98.3=97.5),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGCTGCCAATCACTGC
R:
CATGCAGTCCGTTGGTGATGA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]