RnoEX6010160 @ rn6
Exon Skipping
Gene
ENSRNOG00000018870 | Hapln2
Description
hyaluronan and proteoglycan link protein 2 [Source:RGD Symbol;Acc:621854]
Coordinates
chr2:187397747-187401344:-
Coord C1 exon
chr2:187401289-187401344
Coord A exon
chr2:187398312-187398453
Coord C2 exon
chr2:187397747-187398100
Length
142 bp
Sequences
Splice sites
3' ss Seq
GCCCCCATCCTTCCCTTTAGTAC
3' ss Score
7.58
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GACAGGAAGCTGCTGAGCACTGCTCCCTTTGCCTCTGAGGAGAGATCATCTTGCAG
Seq A exon
TACTAAGGCGTGCCTATCAACTGTGCCCTGCAGACAGTGCTTGCTGACATCACCATGCCAAGCTGGATCCCTCTCCCTGCGTTCTGCTGCCTCCTTCTCCCCTGGGCCTTCACCGTCTTTCACAAAACCCTGGGGAACCCCG
Seq C2 exon
CCCCCCATCCGGGTCCCCACTACCTCCTGCCCCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGGGAGCTCCGGGAAACGCTAATCCTCATCACCAACGGACTGCACGCCCGGGACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAAGATGAGGGTCGGTACCGCTGCGAGCTCATCAATGGCATCGAGGACGAGAGCGTGGCACTGACCCTGCGCCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018870-'2-7,'2-4,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0768612=V-set=WD(100=94.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTTGCCTCTGAGGAGAG
R:
CTCCCAGGAGCCCGTAGTC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]