GgaALTA1015800-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32320374-32321076:-
Coord C1 exon
chr2:32320866-32321076
Coord A exon
NA
Coord C2 exon
chr2:32320374-32320470
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTCATGTGGTTACAGTGCAGAAG
3' ss Score
-0.31
Exon sequences
Seq C1 exon
GAATCTGGAAAACCTGGTGCTCATGTTACTGTGAAAAAACTATTTGTTGGCGGTATTAAAGAGGACACTGAGGAGCACCACCTTCGTGACTACTTCGAGGAATATGGAAAAATTGACACTATTGAAATCATTACTGACAGACAGTCTGGTAAAAAGAGAGGGTTTGGATTTGTTACATTTGATGACCATGATCCTGTGGATAAAATTGTAT
Seq A exon
NA
Seq C2 exon
AAGTATCACACCATTAACGGCCACAATGCAGAAGTAAGGAAAGCCCTCTCTAGACAGGAAATGCAAGAAGTTCAAAATTCTAGGAGTGGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036-21-17,21-16,21-15-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(81.4=80.3)
A:
NA
C2:
PF0007617=RRM_1=PD(17.1=34.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACCATGATCCTGTGGA
R:
GCATTTCCTGTCTAGAGAGGGC
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]