HsaALTA1021087-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000122566 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
Coordinates
chr7:26196585-26197017:-
Coord C1 exon
chr7:26196807-26197017
Coord A exon
NA
Coord C2 exon
chr7:26196585-26196653
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
AATTTTTCATTCCAGTGCAGAAA
3' ss Score
3.4
Exon sequences
Seq C1 exon
GAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATGATCCTGTGGATAAAATCGTAT
Seq A exon
NA
Seq C2 exon
AAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122566-18-20,18-19,18-18-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.685
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(81.4=80.3)
A:
NA
C2:
PF0007617=RRM_1=PD(17.1=34.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTTTGGCTTTGTTACT
R:
AGACAAAGCCTTTCTTACTTCTGCA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains