GgaALTA1015804-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32315607-32318061:-
Coord C1 exon
chr2:32317979-32318061
Coord A exon
NA
Coord C2 exon
chr2:32315607-32315707
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTTTTTCTTTGGCAGGAAGGTG
3' ss Score
-0.94
Exon sequences
Seq C1 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
Seq A exon
NA
Seq C2 exon
GTGCCATGCTGCAGGTAACTAATGAAGAAGTGGTCAACCACAGAAACGCTTCAAGAAATAAGAAATTCTGTATCATCAGAAAATAGTTGTTTTTGCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036-35-34,35-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATGGAGGGAGAAGCCG
R:
AAGCGTTTCTGTGGTTGACCA
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]