GgaEX1028905 @ galGal4
Exon Skipping
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32316522-32318061:-
Coord C1 exon
chr2:32317979-32318061
Coord A exon
chr2:32316897-32317826
Coord C2 exon
chr2:32316522-32316656
Length
930 bp
Sequences
Splice sites
3' ss Seq
CTTTACTTCTGTTGAAACAGGCT
3' ss Score
6.57
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
Seq A exon
GCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATGGAAATAACAATGTTAAGGAAACACTTATCTCAGTCATGCATAAATATGCAGTGGTATGGCAGAAGACACCAGAGCAGATGCAGAGAGCCATTTTGTGAATGGATTTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAATGCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTTTAGTGGTCTTTGTAAGTGTAGAAGCATTCCTTTGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCTATTAGCCAGGATCATGGTGTAATAAGACATAACGTTTTCCTTTTAAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTGTACATTTATGATTTAATAAAATAATTCTAAAGGAAATATTGTGTAATTTTAGATTTTTTTTTTAACATTGTAAAATAAGGAAAGGAGTGGGTAGTATAAGGTCCCACAAATAATACAAAGCTATTGTTGTACGTGTAAAATTAAATGCTGGTCAGAAAAAAAAAGTATGTTGTCTTTAAATGATCAGGTTTAAAGTATCTAGATAACTTAAGGGATATCTCTGCAAGGAGAAACACCTTTTTAGATCTTTTAGATGCTGCTTCTTCAATGGCAAGGAAAGGAAATATCCCCAGCGAGGTACTCTTCCAGGGACACAGGTCTAGTACAAGAGAACTCTTGAAAACGTCACTAAGTTCAGCCAGTCTTAAAAAGCTGCGCTGTATTTCTGCAAAGCTTTAACTACAATAGTTGTATAAGGATGCCAACGAAGGCTGAGGGAGTAGAGCAAACTTAGTTCTAAGCTTCAGTTAAACTTCTTTAG
Seq C2 exon
CTATGATATGAATCCTGGACAAGCATAGACTGCTGCCACTGTACTCTGCTACAGTTGAACAAATGAGACCTGCAAGTGTCCATTAGTAAAGCTTTGCAAGGGTTCCATCCCTGGTGTTGGTAGTTAAAATGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTATGGTCCCGGTGGC
R:
CCATTTTAACTACCAACACCAGGGA
Band lengths:
215-1145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]