GgaALTA1016029-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001000 | HSPA5
Description
78 kDa glucose-regulated protein [Source:UniProtKB/Swiss-Prot;Acc:Q90593]
Coordinates
chr17:9594489-9595410:-
Coord C1 exon
chr17:9595179-9595410
Coord A exon
NA
Coord C2 exon
chr17:9594489-9594573
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TGCTGTTGTTACTGTGCCAGCCT
3' ss Score
3.59
Exon sequences
Seq C1 exon
TGTGGGTGTATTCAAGAACGGCCGCGTGGAAATCATTGCCAATGACCAGGGGAACCGCATCACGCCATCCTACGTGGCGTTCACGCCTGAGGGGGAGCGCCTGATTGGGGATGCAGCCAAGAACCAGCTGACATCCAACCCTGAGAACACTGTGTTTGATGCCAAGCGGCTCATAGGCCGCACCTGGAATGACCCCTCTGTACAGCAGGACATCAAGTATCTGCCCTTCAAG
Seq A exon
NA
Seq C2 exon
CCTACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001000-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(12.7=100)
A:
NA
C2:
PF0001215=HSP70=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGTTTGATGCCAAGCG
R:
CCAGCATCTTTTGTGGCCTGA
Band lengths:
128-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]