GgaALTA1016029-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001000 | HSPA5
Description
78 kDa glucose-regulated protein [Source:UniProtKB/Swiss-Prot;Acc:Q90593]
Coordinates
chr17:9594489-9595410:-
Coord C1 exon
chr17:9595179-9595410
Coord A exon
chr17:9594574-9594601
Coord C2 exon
chr17:9594489-9594573
Length
28 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
AACGTAATTGTTTTGTGCAGGTT
3' ss Score
7.08
Exon sequences
Seq C1 exon
TGTGGGTGTATTCAAGAACGGCCGCGTGGAAATCATTGCCAATGACCAGGGGAACCGCATCACGCCATCCTACGTGGCGTTCACGCCTGAGGGGGAGCGCCTGATTGGGGATGCAGCCAAGAACCAGCTGACATCCAACCCTGAGAACACTGTGTTTGATGCCAAGCGGCTCATAGGCCGCACCTGGAATGACCCCTCTGTACAGCAGGACATCAAGTATCTGCCCTTCAAG
Seq A exon
GTTACTCATGCTGTTGTTACTGTGCCAG
Seq C2 exon
CCTACTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001000-6-5,6-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(12.7=100)
A:
NA
C2:
PF0001215=HSP70=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGTTTGATGCCAAGCG
R:
CCAGCATCTTTTGTGGCCTGA
Band lengths:
128-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]