MmuALTA0008837-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026864 | Hspa5
Description
heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
Coordinates
chr2:34628690-34629453:+
Coord C1 exon
chr2:34628690-34628827
Coord A exon
NA
Coord C2 exon
chr2:34629341-34629453
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TTGCACGGTTGTCCTTCTAGGTT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTGGTTGAAAAGAAAACTAAACCGTACATTCAAGTTGATATTGGAGGTGGGCAAACCAAGACATTTGCCCCAGAAGAAATTTCTGCCATGGTTCTCACTAAAATGAAGGAGACTGCTGAGGCGTATTTGGGAAAGAAG
Seq A exon
NA
Seq C2 exon
GTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGACAAGCAACCAAAGATGCTGGCACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026864-6-9,6-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(7.4=100)
A:
NA
C2:
PF0001215=HSP70=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTGAAAAGAAAACTAAACCGT
R:
GGCTCATTGATGATCCTCATGACA
Band lengths:
251-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: