GgaALTA1016030-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006512 | HSPA8
Description
heat shock cognate 71 kDa protein [Source:RefSeq peptide;Acc:NP_990334]
Coordinates
chr24:3070836-3071291:+
Coord C1 exon
chr24:3070836-3071041
Coord A exon
NA
Coord C2 exon
chr24:3071190-3071291
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CCTATTTTAACGACTCCCAGCGA
3' ss Score
2.65
Exon sequences
Seq C1 exon
ATGCAAAACGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAGTCTGATATGAAGCATTGGCCTTTCACTGTGGTGAATGATGCTGGCAGGCCAAAAGTCCAGGTGGAATACAAAGGAGAGACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCATGGTCCTAACGAAAATGAAGGAAATTGCAGAAGCATATCTTGGGAAG
Seq A exon
NA
Seq C2 exon
CGACAGGCCACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCTGCTGCTATAGCCTACGGTCTGGATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006512-13-4,13-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(11.2=100)
A:
NA
C2:
PF0001215=HSP70=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGCTGGCAGGCCAAAA
R:
AGCATCTTTTGTGGCCTGTCG
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]