MmuALTA0008839-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000015656 | Hspa8
Description
heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384]
Coordinates
chr9:40610501-40610974:+
Coord C1 exon
chr9:40610501-40610706
Coord A exon
chr9:40610873-40610878
Coord C2 exon
chr9:40610879-40610974
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTTACTTCAATGACTCTCAGCGA
3' ss Score
3.99
Exon sequences
Seq C1 exon
ATGCCAAACGTCTGATCGGGCGTAGGTTTGATGATGCTGTTGTTCAGTCTGATATGAAGCACTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTGGAATACAAAGGGGAGACAAAAAGTTTCTACCCAGAGGAAGTGTCCTCCATGGTTCTGACAAAGATGAAGGAAATTGCAGAAGCGTACCTCGGAAAG
Seq A exon
CGACAG
Seq C2 exon
GCAACAAAAGATGCTGGAACTATTGCTGGCCTCAATGTACTTCGAATCATCAATGAACCAACTGCTGCTGCTATTGCTTACGGCTTAGATAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015656-9-6,9-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=PD(42.3=95.9)
A:
NA
C2:
PF0001215=HSP70=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCAGAAGCGTACCTCGG
R:
GCAGCAGCAGTTGGTTCATTG
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: