GgaALTA1016564-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001964 | INPP5E
Description
inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr17:7877831-7878671:+
Coord C1 exon
chr17:7877831-7877928
Coord A exon
chr17:7878547-7878549
Coord C2 exon
chr17:7878550-7878671
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
GCTGTTGTTCTCTCCTGCAGAAG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GAACTTCCAGAGAATCTGGATGACTTCTTGTTGCCAACAGATCCTGACTATGCCCAGGACATGTATGTCATTGGGGTTCAAGAAGGCTGTCCAGACAG
Seq A exon
AAG
Seq C2 exon
AGAGTGGGAAATCCGCCTCCAGGAGACGCTGGGCCCCCACTACGTCATGCTCTACTCTGCTGCGCACGGAGTGCTCTACATGTCAGTCTTCATTCGAAGGGACCTGATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964-7-6,7-5,7-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGTTCAAGAAGGCTGTC
R:
CGCAGCAGAGTAGAGCATGAC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]