RnoALTA0019320-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3847088-3847926:-
Coord C1 exon
chr3:3847829-3847926
Coord A exon
chr3:3847111-3847212
Coord C2 exon
chr3:3847088-3847110
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACCTGCCTCCTCCCCACAGGCG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GAGCTTCCGGCAAGCCTGGATGAGTTTCTGCTTCCCACCGAGGCTGACTACACACAGGACCTGTATGTCATTGGCGTTCAGGAGGGCTGCTCTGACAG
Seq A exon
GCGGGAATGGGAGACACGCTTGCAGGAGACACTGGGCCCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATCCGTAG
Seq C2 exon
GGACCTCATCTGGTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(11.4=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAGCCTGGATGAGTTTC
R:
CTGAGCAGAACCAGATGAGGT
Band lengths:
114-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]