GgaALTA1018023-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007905 | LAMB1
Description
laminin, beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
Coordinates
chr1:14682627-14684129:-
Coord C1 exon
chr1:14683953-14684129
Coord A exon
NA
Coord C2 exon
chr1:14682627-14682786
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTTCTATCTGGAACAACAGGTC
3' ss Score
3.67
Exon sequences
Seq C1 exon
ATTCAATCCGAAAATGCAGCATCTGAAGAAACACTGAACAATGCCACTTTACGTCTGTTTGCGCTTGAGAGGAGTGTTGAAGACCTTAAGCAAAAGGCTGCTACAAATTCAGAAAATGTGGGCAACATAGAAGAAAAAATCATTTCTGCAAAACAAAATGCTGAAGAAGTTAAACAG
Seq A exon
NA
Seq C2 exon
GTCCTCGACACCGAGCTGAACAGCAAGTACAAAACCGTGGAGGATCTCATCACCAAAAAGACAGAGGAGTCTGCTGATGCGAGGAGGAAAGCAGGCTTGTTGCAAGAGGAAGCAAAGGCATTGCTGGCTCAAGCCAACAGCAAGCTGCAGCTGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007905-43-55,43-54-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTGCGCTTGAGAGGAGT
R:
TGGTGATGAGATCCTCCACGG
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]