MmuALTA1001416-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31327645-31329269:+
Coord C1 exon
chr12:31327645-31327821
Coord A exon
chr12:31329110-31329145
Coord C2 exon
chr12:31329146-31329269
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTCTTAAACTCTATCTGCAGACT
3' ss Score
8.56
Exon sequences
Seq C1 exon
ATTGAATCTGAAACGGCAGCTTCTGAGGAAACCCTGACCAACGCCTCCCAGCGCATCAGCAAGCTTGAGAGGAACGTGGAAGAGCTTAAGCGTAAAGCTGCCCAGAACTCTGGGGAGGCAGAATATATCGAAAAAGTAGTATATTCTGTAAAACAGAATGCAGACGATGTTAAGAAG
Seq A exon
ACTCTAGATGGCGAACTTGATGAAAAGTATAAGAAG
Seq C2 exon
GTAGAAAGTTTAATTGCCCAAAAAACTGAAGAGTCAGCAGATGCCAGGAGGAAAGCTGAGCTGCTACAAAATGAAGCAAAAACACTCTTGGCTCAAGCTAACAGCAAGCTCCAGCTGTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-60-57,60-56-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCTGGGGAGGCAGAAT
R:
TCCTGGCATCTGCTGACTCTT
Band lengths:
123-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types