GgaALTA1018771-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30499657-30502566:-
Coord C1 exon
chr3:30502426-30502566
Coord A exon
chr3:30499758-30499827
Coord C2 exon
chr3:30499657-30499757
Length
70 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
AATACTTTTTTCTCCATCAGAAC
3' ss Score
8.08
Exon sequences
Seq C1 exon
ACACGGATGAATGTCAGGACCCAAACAGCTGTATTGATGGCCAGTGCATTAACACAGAAGGATCTTACAACTGTTTCTGTACACACCCAATGGTTTTGGACGCAACAGAAAAGCGATGCATCAGACCAGCAGATTCAAGTG
Seq A exon
AACAAACTGAAGAAACTGAGGTCTACCAGGATCTTTGCTGGCAGCATCTAAGTGACGATTTTGTTTGTAG
Seq C2 exon
TCGACCTCTGGTTGGAAAGCAGACTACATACACTGAGTGCTGTTGCTTGTATGGTGAAGCCTGGGGCATGCAGTGTGCCTTGTGTCCGATGAAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-58-69,58-68-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=83.3)
A:
NA
C2:
PF0068312=TB=PU(85.7=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTATTGATGGCCAGTGC
R:
CCCAGGCTTCACCATACAAGC
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]