GgaALTA1019241-4/6 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36199164-36200277:+
Coord C1 exon
chr7:36199164-36199955
Coord A exon
chr7:36200124-36200200
Coord C2 exon
chr7:36200201-36200277
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCTCTCTTTCGCTTTTCAGTGC
3' ss Score
11.39
Exon sequences
Seq C1 exon
GTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAG
Seq A exon
TGCCTCCAACATTAGGAAGCAGTCTATCTGACAATCTTATGATAACTGTAGATATTATTCCTTCTGGCTGGAGTCAG
Seq C2 exon
TCTGATGGACAAGAAAGTGACAAGTCCAAAATACCACCTTCAAGAGATCCAGAAAGACTGCAGAAAATTAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584-13-20,13-19,13-18,13-17,13-16,13-15-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCCTGGTTGTCATCATCT
R:
TGGACTTGTCACTTTCTTGTCCA
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]