GgaINT1017486 @ galGal4
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36199164-36200277:+
Coord C1 exon
chr7:36199164-36199955
Coord A exon
chr7:36199956-36200123
Coord C2 exon
chr7:36200124-36200277
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCTCTCTTTCGCTTTTCAGTGC
3' ss Score
11.39
Exon sequences
Seq C1 exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAG
Seq A exon
GTGAGGAGACCTCTCTTGAAGCATCAGATGGCCCCCCTAGGGCTTCTGTTAGCAGACCACCAACACCTGCAGTATCTGGTATTCCTACAGCTACTGCCTCCCCACCAGATTCAGCCCACAATAGGCGAAGTTCTGGAATTCTGCCTAGTTCTCTCTTTCGCTTTTCAG
Seq C2 exon
TGCCTCCAACATTAGGAAGCAGTCTATCTGACAATCTTATGATAACTGTAGATATTATTCCTTCTGGCTGGAGTCAGTCTGATGGACAAGAAAGTGACAAGTCCAAAATACCACCTTCAAGAGATCCAGAAAGACTGCAGAAAATTAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAAGTAGGAGCACAGGGT
R:
GACTGACTCCAGCCAGAAGGA
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]