GgaALTA1020592-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4133269-4133967:-
Coord C1 exon
chr21:4133862-4133967
Coord A exon
NA
Coord C2 exon
chr21:4133269-4133284
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AATATTTTTGTTTTCTTTAGGTG
3' ss Score
11.11
Exon sequences
Seq C1 exon
GTCGAGACTTCTCTCATGATGAAACTCTTGATGTACCCACACAAGTAGAATTGCTCATTAAGCAAGCTACTTCTCATGAGAATCTGTGCCAGTGCTACATTGGATG
Seq A exon
NA
Seq C2 exon
GTGTCCTTTCTGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-72-76,72-75-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226015=FATC=PU(84.8=77.8)
A:
NA
C2:
PF0226015=FATC=PD(12.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]