MmuALTA0011444-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:147930376-147931437:+
Coord C1 exon
chr4:147930376-147930481
Coord A exon
chr4:147930954-147931336
Coord C2 exon
chr4:147931337-147931437
Length
383 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTTTCTGTCACCTTCCTAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTCGGGATTTCTCTCATGATGACACTTTGGATGTTCCAACCCAAGTGGAGCTGCTTATCAAGCAGGCAACATCTCACGAGAACCTCTGCCAGTGCTACATTGGCTG
Seq A exon
GTGTCCCTTCTGGTAACTGAGGCCTGGAAAACCACGTCGTCTCCTCCCAGGCTTTAGTACCTTGTCTGTGCTTCCAGTGGACTAAAACCATGGACAGACAGTTGGACTTGTTAAATATTTTGAAATGTATATGAAAAGAACTACTGTATATTCAAAGTTGGCTTCCGCCAACCTCCTAGCTGCTGTTGAAAAGACACTGTCAGAAACACAAGGCTTGATTCAGTTCCCAGGACAGTGAAACACAGTAATCCTTCAGAAGCCAAGCCTTGGATTTTGGGAGAACAGAAGATGGGTAACTGAGAAATACGGGTTTTGACTTAACTTACAAGAAAACTCATCATAAACATTGCTGACAGAATAATCCAGTTGGTCCTCTCAACCAG
Seq C2 exon
GGGCTCCAACGGCAAGGACACAGAGGTCGGCACTCCACTATCCTGTTACCTCACCCGTCCCTGGATGCAGTGGCGACATTTGCAGGATGGGCCAACATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-67-70,67-69-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0226015=FATC=PU(84.8=77.8)
A:
NA
C2:
PF0226015=FATC=PD(12.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGGATTTCTCTCATGATGACA
R:
CCATGTTGGCCCATCCTGC
Band lengths:
206-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: