GgaALTA1020758-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7562256-7563113:-
Coord C1 exon
chr14:7563005-7563113
Coord A exon
chr14:7562378-7562428
Coord C2 exon
chr14:7562256-7562377
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ACTTTAACTTTTTCTTGTAGGCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
AGAGAAACAGGCTGCAGCCAAGACATTACGCCAGAAGGACAAGAAGCTGAAGGATGCATTGCTGCAGGTGGAGGACGAGAGAAAACAAGCAGAGCAATACAAAGATCAG
Seq A exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAG
Seq C2 exon
GCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-49-48,49-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAAGGACAAGAAGCTG
R:
TAGCTCTCTCTGCAGCTTCCT
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]