RnoALTA0025237-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852680-853061:+
Coord C1 exon
chr10:852680-852788
Coord A exon
chr10:852889-852892
Coord C2 exon
chr10:852893-853061
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
AATCGTCCTGTCCTTGGCAGGCA
3' ss Score
8.69
Exon sequences
Seq C1 exon
AGAAAAACAGGCAGCCACCAAGTTGCTGAAGCAAAAGGACAAGAAGCTAAAGGAGGTCCTACTGCAGGTGGAGGATGAGCGCAAGATGGTGGAGCAGTACAAGGAGCAG
Seq A exon
GCAG
Seq C2 exon
AGAAAGGAAACACCAAGGTCAAGCAGCTCAAGAGGCAGCTGGAAGAGGCCGAGGAGGAATCCCAGCGCATCAATGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACTGAGAGCAATGAGGCCATGGGCCGTGAGGTGAATGCCCTCAAGAGCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880-62-73,62-72-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=NA C2=0.991
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCAGTACAAGGAGCAG
R:
CATTGATGCGCTGGGATTCCT
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]