GgaALTA1021472-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:954108-956793:+
Coord C1 exon
chr17:954108-954314
Coord A exon
chr17:956672-956677
Coord C2 exon
chr17:956678-956793
Length
6 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
AGGTCCTGCTGCATCTGCAGGTT
3' ss Score
6.75
Exon sequences
Seq C1 exon
CCTGCCCCCTAGATACACCCTGCACTACCTGGCTGAGGACTCCTTGCACTCTGACAGCAGCCTGCTCCAGCCAACACCACCCAGGGCTCTTCCTTCTGAGCTACATCCCTTTGCTGCCCGGATGGTGTCCAACCAGCGCATCACGGCCGAATCCCATTTCCAGGATGTCCGGCTCATTGAGTTTGATGTCACAGGATCAGGGATCAC
Seq A exon
GTTCAG
Seq C2 exon
CGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=PU(17.4=54.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGGCCGAATCCCATTTC
R:
TGGATCATCACCACGTCTCCA
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]