HsaALTA1052494-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr9:137214204-137214691:+
Coord C1 exon
chr9:137214204-137214413
Coord A exon
NA
Coord C2 exon
chr9:137214570-137214691
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TGGTGGCTTCTTCCACACAGCTT
3' ss Score
6.39
Exon sequences
Seq C1 exon
CCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCCAGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCTAGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACATCTTGGGCTCTGGCATCAG
Seq A exon
NA
Seq C2 exon
CTTTGCTGCTGGTGATGTGGTGCTGATTCAGCCCTCCAACTCGGCTGCCCATGTCCAGCGGTTCTGCCAGGTGCTGGGCCTGGACCCTGACCAGCTCTTCATGCTGCAGCCGCGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-9-14,9-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(3.7=7.0),PF0066715=FAD_binding_1=PU(18.1=56.3)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAACCAGAGAGTCACCG
R:
AATCAGCACCACATCACCAGC
Band lengths:
110-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains