GgaALTA1028209-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2862824-2863369:-
Coord C1 exon
chr28:2863275-2863369
Coord A exon
chr28:2862912-2862916
Coord C2 exon
chr28:2862824-2862911
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTGTGTTTGTCCTCATTTAGATC
3' ss Score
9.71
Exon sequences
Seq C1 exon
ATTTAGCTCCAGGAATTGATGAGATCTACGAGGAAAGCAAGGAGGTCTTCCTGACCCCTGGGCACCCACAGGATGGGCAGGTTGTATTTTATAAG
Seq A exon
ATCAG
Seq C2 exon
CGTTGACAGAGGACTGAAGTGGGAGGAAGCTTATGAGAAGTCACTGAAACTGACAGGATCCTATGATGGGTTCTACCTCTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672-40-45,40-44-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGAAAGCAAGGAGGTCT
R:
CCTCCCACTTCAGTCCTCTGT
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]