MmuALTA0015866-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80058637-80058899:-
Coord C1 exon
chr10:80058805-80058899
Coord A exon
chr10:80058706-80058729
Coord C2 exon
chr10:80058637-80058705
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCCCACTTGCCACAGCAGATT
3' ss Score
3.25
Exon sequences
Seq C1 exon
ACCTGGCCCCTGGCATCAACGAGATACATGAAGAAAGCCAGCAGGTGTTCCTGGCACCTGGGCACCCACAGGATGGGCAAGTGGTCTTCTACAAG
Seq A exon
ATTAGCGTGGACCGCGGTATGAAG
Seq C2 exon
TGGGAAGAGGCATTAACTAGGTCGCTGGAGCTCAAAGGTCCCTATGATGGCTTCTACCTCTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-62-75,62-74,62-73-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PD(0.1=0.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGCCAGCAGGTGTTCC
R:
TAGGGACCTTTGAGCTCCAGC
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types