GgaALTA1028560-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010581 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr5:40235369-40236260:-
Coord C1 exon
chr5:40236093-40236260
Coord A exon
NA
Coord C2 exon
chr5:40235369-40235468
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TTTGCTTTTAAAAGCTGAAGAGC
3' ss Score
-6.43
Exon sequences
Seq C1 exon
TTTTGACAGCTATTGGAGGCACTGCAGATGGTGAACCTTGCCACTTCCCCTTTTTGTTTATGGAGAAGGAGTATGCAGAGTGTACTGCAGATGGGAGGGAAGACGGCAGGCTTTGGTGTGCAACAACCTATGATTACAAGAAGGATCAAAAGTGGGGCTTCTGTGAAA
Seq A exon
NA
Seq C2 exon
AGCAGTCCAATAAGAGGAGGCAGATGCAAGAAGCTGAGGATATTTATCAGACTGGAATGAAAATCCTTAATGAAAGCACTAAAAAGGCTCAGAAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010581-8-8,8-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=73.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTTTGGTGTGCAACAAC
R:
CTCAGCTTCTTGCATCTGCCT
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]