RnoALTA0035530-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004464 | Sel1l
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol;Acc:620147]
Coordinates
chr6:115598325-115600040:-
Coord C1 exon
chr6:115599873-115600040
Coord A exon
NA
Coord C2 exon
chr6:115598325-115598424
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGCGT
5' ss Score
5.93
3' ss Seq
CATTTCATTGTCAGCCGAAGAAG
3' ss Score
-4.7
Exon sequences
Seq C1 exon
TTTTGACTGCCATTGAAGGTACGGCGCACGGGGAGCCCTGCCACTTCCCTTTCCTTTTCCTGGATAAGGAATATGATGAGTGCACATCAGACGGGAGGGAAGATGGCAGACTGTGGTGTGCCACAACCTATGACTACAAGACAGATGAGAAGTGGGGCTTCTGCGAAA
Seq A exon
NA
Seq C2 exon
AAGATGCTGCCAAAAGGCGACAGATGCAGGAAGCAGAAGCCATCTATCAGAGCGGGATGAAGATCCTGAACGGCAGCACCAGGAAGAACCAAAAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004464-11-10,11-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=73.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGGCAGACTGTGGTG
R:
CTTCCTGCATCTGTCGCCTTT
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]