GgaALTA1028585-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013722 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr12:3223592-3223825:+
Coord C1 exon
chr12:3223592-3223661
Coord A exon
chr12:3223727-3223739
Coord C2 exon
chr12:3223740-3223825
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
TGCCCCATTTCTCTCCCCAGCTC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTGACGTCTTCCTGCTGCAGACGAGGGACAAGCGCAACCCTTTGGTCTATGCTGCCTTCTCCACCTCCAG
Seq A exon
CTCCATCTTCCAG
Seq C2 exon
GGCTCGGCCGTCTGCGTTTACACCATGGCCGACATCCGCCGGGCGTTCCTGGGCCCCTTTGCGCACAAGGAGGGCCCCAACTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013722-14-17,14-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.3=100)
A:
NA
C2:
PF0140314=Sema=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCTTCCTGCTGCAGAC
R:
ATGTCGGCCATGGTGTAAACG
Band lengths:
103-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]