HsaALTA1001417-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50273759-50274057:+
Coord C1 exon
chr3:50273759-50273828
Coord A exon
chr3:50273913-50273915
Coord C2 exon
chr3:50273916-50274057
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCCTGGTCTTCGCCTCCAGCAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
AGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAG
Seq A exon
CAG
Seq C2 exon
CATCTTCCAGGGCTCTGCGGTGTGCGTGTACAGCATGAACGACGTGCGCCGGGCCTTCTTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCATACCAGGGTCGCGTCCCCTACCCGCGGCCAGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171-26-32,26-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.2=100)
A:
NA
C2:
PF0140314=Sema=PU(22.7=97.2)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTATGCCGTCTTCTCCA
R:
GTGTGCAAAGGGTCCCAAGAA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains