Special

ENSMUSG00000057969 @ mm10

Biotype
protein_coding
Gene Symbol
Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107597674-107609229:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
69.9
32.11
0
Alternative 3'ss
4
chr9:107607093-107607096
-
30.1
32.11
0
Alternative 5'ss
0
NA
-
27.21
41.43
0
Alternative 5'ss
6
chr9:107606550-107606555
-
72.79
41.43
0
Alternative 5'ss
0
NA
-
87.27
40.15
0
Alternative 5'ss
31
chr9:107605416-107605446
-
12.73
40.15
0
Exon Skipping
105
chr9:107606550-107606654
-
23.25
44.54
0
Exon Skipping
59
chr9:107607034-107607092
-
95.1
15.12
0
Exon Skipping
181
chr9:107606754-107606934
-
34.65
42.88
0
Exon Skipping
141
chr9:107605447-107605587
-
84.31
63.02
0
Intron Retention
291
chr9:107605156-107605446
-
10.18
76.47
0
Intron Retention
222
chr9:107600108-107600329
-
13.91
42.58
0
Intron Retention
2028
chr9:107607093-107609120
-
22.99
98.05
0
Intron Retention
1446
chr9:107605588-107607033
-
14.6
42.11
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000012171 SEMA3B 1-to-1
Human hg19 ENSG00000012171 SEMA3B 1-to-1
Rat rn6 ENSRNOG00000016512 Sema3b 1-to-1
Cow bosTau6 ENSBTAG00000010138 SEMA3B 1-to-1
Chicken galGal4 ENSGALG00000013722 SEMA3B 1-to-1
Chicken galGal3 ENSGALG00000013722 1-to-1
Zebrafish danRer10 ENSDARG00000011672 sema3b 1-to-1