MmuEX0041584 @ mm10
Exon Skipping
Gene
ENSMUSG00000057969 | Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107605447-107606934:-
Coord C1 exon
chr9:107606754-107606934
Coord A exon
chr9:107606550-107606654
Coord C2 exon
chr9:107605447-107605587
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGCCTTCTTCCCTTCCCCAGGAC
3' ss Score
10.47
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGACAGGTTTCTGGAACTATATCCTTGGGGCACCCTTCACCTTGAAACCCAGAAGGAGAGGGCCATCTTTACCTGCCCAACCCTTGCTCTCATTCCACTCCTGCGGGGCCACCGGTCTCCAGCCAGTCCCAGCTGCCTGTGCCGGTCACCCGATCCACCCTGTAGCCCTGCAAACTTTATG
Seq A exon
GACAAGAGGGGTCAAGGTGGGAGACCCCTGTCAGAGTTCTTGGTGGAGTGTGGGAAGGCAGCCTTGTCAGCCTCACAGACTTCTAGTACCTGAGAAAAGGTGCAG
Seq C2 exon
CAACTGCTTTGCTCTTTGCACTTGGTGCCCTCTGGAATGACCACAGGATCTGACTCTCATCTGTCGGCTCTTCGCCCTTTACTGCCTGGGGACCTTGTCCGCATCATCAGTATCCTTGTCTCTGCCCCAGGCTGGCATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057969_MULTIEX2-3/4=2-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTTACCTGCCCAACCC
R:
CCTGGGGCAGAGACAAGGATA
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types