MmuEX0041587 @ mm10
Exon Skipping
Gene
ENSMUSG00000057969 | Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107604969-107606654:-
Coord C1 exon
chr9:107606550-107606654
Coord A exon
chr9:107605447-107605587
Coord C2 exon
chr9:107604969-107605155
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCCACCCACTCTCCTGCAGCAA
3' ss Score
7.86
5' ss Seq
GAAGTGGGT
5' ss Score
2.85
Exon sequences
Seq C1 exon
GACAAGAGGGGTCAAGGTGGGAGACCCCTGTCAGAGTTCTTGGTGGAGTGTGGGAAGGCAGCCTTGTCAGCCTCACAGACTTCTAGTACCTGAGAAAAGGTGCAG
Seq A exon
CAACTGCTTTGCTCTTTGCACTTGGTGCCCTCTGGAATGACCACAGGATCTGACTCTCATCTGTCGGCTCTTCGCCCTTTACTGCCTGGGGACCTTGTCCGCATCATCAGTATCCTTGTCTCTGCCCCAGGCTGGCATGAA
Seq C2 exon
ATCCTGGGGCAGAGTCCAGGACTGCTGAAGGCTCCTCCACACACGCCTGCTGAACCCTGAGCGCCCTGAGCTGCCGGCATGGGGCGGGCTGAGGCCGCCGCCATGATCCCAGGCCTGGCCCTTCTCTGGGTAGCAGGGCTAGGGGATACTGCCCCTAACCTTCCCCGCCTTCGGCTCTCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057969_MULTIEX2-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGTCAGAGTTCTTGGT
R:
GGGGAAGGTTAGGGGCAGTAT
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types