GgaALTA1029511-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10390168-10391093:+
Coord C1 exon
chr17:10390168-10390379
Coord A exon
chr17:10390950-10391064
Coord C2 exon
chr17:10391065-10391093
Length
115 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TGCATCATCTTTTTTAATAGGGA
3' ss Score
7.92
Exon sequences
Seq C1 exon
GATTGACACTAAAATGGCACTGGCTGGCAGTATTATGTTCTTTTCCACCATGCGTAATGCTTTTGTTTATGTTGTTCATGCCTGAAACACCGAGATTTCTGCTGGATCAGAAGAAACGTGCAGAAGCTATAGCTGCTTTACAGTTTCTGCGAGGACCATACGTGGACCATGAATGGGAATGCAGGCAAATTGAAGCTAATGTTGAGGAGGAG
Seq A exon
GGACTAAGCCTCTTTGAATTTAAGAATCCTTCAATCTACAGGCCACTTCTTATTGGTGTGATTCTGATGTTTCTCCAGCAAGTAACAGGCATTAATGCAGTTATGTTTTATGCAG
Seq C2 exon
AAACAATCTTTGAAGATGCAAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-6-18,6-17,6-16,6-15-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.5=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAATGGCACTGGCTGGC
R:
CTGGAAGTTTGCATCTTCAAAGA
Band lengths:
234-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]