RnoALTA0036900-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12023358-12024653:-
Coord C1 exon
chr3:12024454-12024653
Coord A exon
chr3:12023421-12023501
Coord C2 exon
chr3:12023358-12023420
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACAGGCCATCTTTGTGACAGGGC
3' ss Score
5.65
Exon sequences
Seq C1 exon
GCTGGGTCCTAGAATGGCGCTGGTTGGCTGTGCTGGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGCTTCCTCCTGACGCAACACCAGTACCAGGAGGCCATGGCTGCCCTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAGAGCCCCCTGTTGGGGCTGAGCACCAG
Seq A exon
GGCTTCCAGCTGGCTATGCTGAGGCGCCCTGGTGTCCACAAGCCCCTCATCATCGGCATTTGCCTCATGGTCTTCCAGCAG
Seq C2 exon
CTGTCAGGGGTCAACGCCATCATGTTCTATGCCAACACCATCTTTGAGGAGGCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274-4-10,4-9,4-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(14.8=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTGCTCATGTGCTA
R:
AGAACATGATGGCGTTGACCC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]