GgaALTA1033445-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006722 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
Coordinates
chr24:3877021-3881447:+
Coord C1 exon
chr24:3877021-3877104
Coord A exon
chr24:3881346-3881348
Coord C2 exon
chr24:3881349-3881447
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CAACCTCTTCTATCTTCCAGTAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTGACCACCGGTACATGATGAACAACTACGAGTGGAACCAGCCCGACAACTTGAAGAGATTTTCCATGTTCCTGTCTCCCAAAG
Seq A exon
TAG
Seq C2 exon
GCAATGGCACTAAGCTGCCTTTTCAGTTCTCCTCGGTGGGACAGAATCCGCCCGGTGACTTCAGCAAACAGTCTGATGGGAGCCTCTTCACTAAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006722-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGCCCGACAACTTGAA
R:
GATTCTGTCCCACCGAGGAGA
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]