GgaEX1060382 @ galGal4
Exon Skipping
Gene
ENSGALG00000006722 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
Coordinates
chr24:3877021-3881447:+
Coord C1 exon
chr24:3877021-3877104
Coord A exon
chr24:3880123-3880182
Coord C2 exon
chr24:3881346-3881447
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGGATGCTCTTGTTTTACAGCCA
3' ss Score
8.15
5' ss Seq
TTGGTACGG
5' ss Score
6.56
Exon sequences
Seq C1 exon
GTGACCACCGGTACATGATGAACAACTACGAGTGGAACCAGCCCGACAACTTGAAGAGATTTTCCATGTTCCTGTCTCCCAAAG
Seq A exon
CCAGTTTCAATCCACGGTCATGGGAATTTTCCTCCTTCCAAGCGACTGAGGAAACACTTG
Seq C2 exon
TAGGCAATGGCACTAAGCTGCCTTTTCAGTTCTCCTCGGTGGGACAGAATCCGCCCGGTGACTTCAGCAAACAGTCTGATGGGAGCCTCTTCACTAAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006722_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACGAGTGGAACCAGCC
R:
ACTGTTTGCTGAAGTCACCGG
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]