GgaALTA1033646-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6733690-6734310:-
Coord C1 exon
chr17:6734187-6734310
Coord A exon
chr17:6733800-6733802
Coord C2 exon
chr17:6733690-6733799
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
GTTTTGCTCCCACTTTTCAGCAG
3' ss Score
7.08
Exon sequences
Seq C1 exon
GTTACCATCTGGAGTCCTTCTGCAGTTTGTGGTATGACCACTCCACCAACCTCCCCTGGAATTGTCCCATCAGAGTCATCCCAGTCAACATCACAACCTTACAGCAAAGCTTTTGGCACATCTG
Seq A exon
CAG
Seq C2 exon
TGGGGAAGGGAACACCTTTGGGGACACCAGCCACATCTCCTCCACCCTGCACTTCAGATGACTTTGTGCATGTCTCACTTCCTTCAGCTGCTGCCACACCTCCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-12-17,12-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.7=100)
A:
NA
C2:
PF043887=Hamartin=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTGGAATTGTCCCATCA
R:
CTGGTGTCCCCAAAGGTGTTC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]